#NEXUS

BEGIN TREES;

Tree speceiesTree = ((((a,b),c),d),e);
Tree geneTree1 = ((((a::.5,b::.5)::.5,c::.5)::.5,d::.5)::.5,e::.5)::.5;
Tree geneTree2 = ((a::.5,b::.5)::.5,((c::.5,e::.5)::.5,d::.5)::.5)::.5;
Tree geneTree3 = ((a::.5,c::.5)::.5,((b::.5,e::.5)::.5,d::.5)::.5)::.5;

END;


BEGIN PHYLONET;

DeepCoalCount {speceiesTree} {geneTree1, geneTree2, geneTree3} -b .5;

END;
===

DeepCoalCount {speceiesTree} {geneTree1, geneTree2, geneTree3} -b .5
Species_Tree#1 = ((((a:0,b:0):1,c:0):2,d:0):4,e:0):0;
Total number of extra lineages: 7
===
